The second (middle) domain for each subunit is decribed as having a TIM barrel topology. Human erythrocyte pyruvate kinase is an oligomeric protein containing four identical subunit. Place the file in the same folder as the "Jmol.jar" application file. Go to the PDB website and download the structure file with PDB ID 1LIU, which contains the atomic coordinates for human erythrocyte pyruvate kinase 1LIU. Now that you are an expert with using the Protein Data Bank website: View the animated tutorial on the Protein Data Bank website. The website has an animated tutorial that introduces the viewer to some the features of the new interface for the Protein Data Bank. The Protein Data Bank website currently contains close to 40, 000 structure files along with a wealth of information on structural biology and bioinformatics. The RCSB is a collaboration between Rutgers University, the University of California-San Diego and the University of Wisconsin-Madison.
JMOL REACTIVE CODE
The best source of structure files for biological macromolecules is the Protein Data Bank, which is a Federally supported database that is hosted by Rutger University and is managed by the Research Collabratory for Structural Bioinformatics (RCSB). 6.4 kcal/mole Autoignition Temp (C) 450 Boiling Point (C/mmHg) 26.6-26.7 Density (g/mL) 0.641 Flash Point (C) -27 ☌ Melting Point (C) -99° Additional Information Technical Papers Technical Library & Brochures Related Products SIE4901.5 ETHYLTRIMETHYLSILANE Product Code SIE4901.5 CAS No SDS Sheets EU US Silanes SIT7555. The Jmol application is a standalone Java application that runs on the desktop.
JMOL REACTIVE MAC OS
It is cross-platform, running on Windows, Mac OS X, and Linux/Unix systems. We will now obtain a structure file that we can work with with Jmol. Jmol is a free, open source viewer of molecular structures useful for students, educators and researchers in chemistry, biochemistry and other fields dealing with molecular structure. Placing the structure files in the same folder as the "Jmol.jar" application will make them easier to find and open.Ĭreate a folder on your "username_X" share and place a copy of the "Jmol.jar" in the folder. To run Jmol as a standalone application, the only file you need is "Jmol.jar":įor this tutorial, we will copy the "Jmol.jar" application file to a separate folder in which we will also place the structure files for the molecules that we wish to look at with Jmol. There are a number of files in the the folder, most of which are used to serve webpages containing Jmol applets. the version that will be used in this tutorial is "Jmol-10.3.1". Go to the Jmol website and download a copy of the latest version of Jmol.Īfter download the download file and extracting it you should endup with a folder called "Jmol-x.x.x", where x.x.x is the version number. Before you can get started with learning how use Jmol, you must first obtain a copy of the program, along with a file containing the atomic coordinates of a molecule that wish to view with Jmol.
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